Music: Toshiyuki Watanabe
Album was composed by and was released on December 16, 1996. Soundtrack consists of 50 tracks tracks with duration over . Album was released by Pony Canyon Inc..
CD 1
| 1 | Main Title (M1) | | |
| 2 | Mass of Rocks (M2) | | |
| 3 | The Broken Seal (M3) | | |
| 4 | The Elias' Departure (M4) | | |
| 5 | Man's Doing (M5) | | |
| 6 | Psychokinesis (M6) | | |
| 7 | Belvara and the Large Tree (M7) | | |
| 8 | The Elias and the Large Tree (M8) | | |
| 9 | LDK Battle 1 (M9) | | |
| 10 | LDK Battle 2 (M10) | | |
| 11 | LDK Battle 3 (M11) | | |
| 12 | The Legend of Desghidorah (M12) | | |
| 13 | The Beginning of the Great Journey (M13) | | |
| 14 | Dynamite Bulldozer (M14) | | |
| 15 | Kite Battle (M15) | | |
| 16 | The Appearance of Desghidorah (M16) | | |
| 17 | The Guardian Goddess of the Beautiful Star (M17) | | |
| 18 | The Mothra Song [Instrumental Version] (M18) | | |
| 19 | The Mothra Song (M19) | | |
| 20 | Mothra Appears (M20) | | |
| 21 | Mothra vs. Desghidorah 1 (M21) | | |
| 22 | The Egg's Will (M22) | | |
| 23 | The Song of Prayer (M23) | | |
| 24 | Mothra vs. Desghidorah 2 (M24) | | |
| 25 | The Shield's Power (M25) | | |
| 26 | The Will of the Larvae (M26) | | |
| 27 | Larva vs. Desghidorah (M27) | | |
| 28 | Mothra in Danger (M28) | | |
| 29 | Bond (M29) | | |
| 30 | Escape (M30) | | |
| 31 | Return to the Sea (M31) | | |
CD 2
| 1 | For the Sake of Rebirth (M32) | | |
| 2 | Desghidorah Soars (M32A) | | |
| 3 | Island of Rebirth (M33) | | |
| 4 | Television News Title (M34) | | |
| 5 | Mothra Leo (M35) | | |
| 6 | Emergence of a Saint (M36) | | |
| 7 | Flight (M37) | | |
| 8 | The New Mothra Fights (M38) | | |
| 9 | Seal (M39) | | |
| 10 | Earth's Revival (M40) | | |
| 11 | Thank You, Mothra (M41-42) | | |
| 12 | Ending (M43) | | |
| 13 | The Will of the Larvae (M26) [Full Version] | | |
| 14 | Seal (M39) [Full Version] | | |
| 15 | Mothra Leo (M35) [Infant Language Version] | | |
| 16 | The Mothra Song [Karaoke Version] | | |
| 17 | The Song of Prayer [Karaoke Version] | | |
| 18 | Mothra Leo [Karake Version] | | |
| 19 | Sound Effects | | |
